Supported WSI file formats

Supported WSI file formats

 

Vendor / File format Extension Compression Brightfield Fluorescence Z-stacking
TIFF .tif, .tiff JPEG, JPEG2000, LZW, Deflate, Raw, RLE Supported
JPEG .jpeg, .jpg JPEG Supported
JPEG 2000 .jp2 JPEG2000 Supported
PNG .png PNG Supported
Olympus VSI .vsi lossless JPEG, JPEG, Raw Supported Supported
Olympus WebView .xml JPEG Supported
Ventana / Roche BIF .bif JPEG Supported Supported
Hamamatsu VMS .vms JPEG Supported
Hamamatsu NDPI .ndpi JPEG Supported Supported Supported
Hamamatsu NDPIS (Image Set) .ndpis JPEG Supported Supported Supported
Hamamatsu DICOM .dcm JPEG, JPEG2000 Supported
Huron Technologies .tif JPEG Supported
3DHistech MRXS .mrxs JPEG, PNG, BMP Supported Supported Supported
Aperio / Leica SVS .svs JPEG, JPEG2000 Supported Supported Supported
Aperio / Leica AFI (Image Set) .afi JPEG, JPEG2000 Supported Supported Supported
Aperio / Leica CWS .cws JPEG Supported
Leica SCN .scn JPEG Supported Supported  Supported
Leica LIF .lif RAW Supported Supported Supported
Leica DICOM Sup145 DICOMDIR JPEG Supported Supported
Carl Zeiss ZVI .zvi Raw, PNG, JPEG, LZW, Deflate, JPEG2000 Supported Supported Supported
Carl Zeiss CZI .czi Supported Supported Supported
Carl Zeiss Laser Scanning Microscopy .lsm JPEG Supported Supported Supported
Open Microscopy Environment OME-TIFF .tf2, .tf8, .btf, .ome.tif JPEG Supported Supported Supported
Nikon ND2 .nd2 Deflate Supported Supported Supported
Nikon TIFF .tif, .tiff JPEG, JPEG2000, LZW, Deflate, Raw, RLE Supported
Philips TIFF .tif JPEG, JPEG2000, LZW, Deflate, Raw, RLE Supported
Sakura SVSlide .svslide JPEG(sqlite2, sqlite3, mssql) Supported Supported
Menarini DSight RAW .ini Raw Supported
Motic .mds JPEG Supported
Zoomify .zif JPEG, JPEG2000, LZW, Deflate, Raw, RLE Supported
SmartZoom .szi JPEG, BMP Supported
Objective Imaging (Glissando) .sws JPEG, BMP Supported Supported
Perkin Elmer QPTiff .qptiff LZW Supported
Vendor / File format Extension Compression Brightfield Fluorescence Z-stacking

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